An application-level parallel I/O library for Earth system models

John M. Dennis; Jim Edwards; Ray Loy; Robert Jacob; Arthur A. Mirin; Anthony P. Craig; Mariana Vertenstein

doi:10.1177/1094342011428143

An application-level parallel I/O library for Earth system models

John M. Dennis
, Jim Edwards
, Ray Loy
, Robert Jacob
, Arthur A. Mirin
, Anthony P. Craig
, Mariana Vertenstein

Argonne National Laboratory
Lawrence Livermore National Laboratory
National Center for Atmospheric Research

Research output: Contribution to journal › Article › peer-review

41 Scopus citations

Abstract

We describe the design and implementation of an application-level parallel I/O (PIO) library for the reading and writing of distributed arrays to several common scientific data formats. PIO provides the flexibility to control the number of I/O tasks through data rearrangement to an I/O friendly decomposition. This flexibility enables reductions in per task memory usage and improvements in disk I/O performance versus a serial I/O approach. We illustrate the impact various features within PIO have on memory usage and disk I/O bandwidth on a Cray XT5 system.

Original language	English
Pages (from-to)	43-53
Number of pages	11
Journal	International Journal of High Performance Computing Applications
Volume	26
Issue number	1
DOIs	https://doi.org/10.1177/1094342011428143
State	Published - Feb 2012

Keywords

Earth System Modeling
Parallel I/O
memory efficient
netCDF
parallel computing

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10.1177/1094342011428143

Cite this

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abstract = "We describe the design and implementation of an application-level parallel I/O (PIO) library for the reading and writing of distributed arrays to several common scientific data formats. PIO provides the flexibility to control the number of I/O tasks through data rearrangement to an I/O friendly decomposition. This flexibility enables reductions in per task memory usage and improvements in disk I/O performance versus a serial I/O approach. We illustrate the impact various features within PIO have on memory usage and disk I/O bandwidth on a Cray XT5 system.",

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AU - Edwards, Jim

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AU - Jacob, Robert

AU - Mirin, Arthur A.

AU - Craig, Anthony P.

AU - Vertenstein, Mariana

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AB - We describe the design and implementation of an application-level parallel I/O (PIO) library for the reading and writing of distributed arrays to several common scientific data formats. PIO provides the flexibility to control the number of I/O tasks through data rearrangement to an I/O friendly decomposition. This flexibility enables reductions in per task memory usage and improvements in disk I/O performance versus a serial I/O approach. We illustrate the impact various features within PIO have on memory usage and disk I/O bandwidth on a Cray XT5 system.

KW - Earth System Modeling

KW - Parallel I/O

KW - memory efficient

KW - netCDF

KW - parallel computing

UR - https://www.scopus.com/pages/publications/84857764170

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JF - International Journal of High Performance Computing Applications

IS - 1

ER -

An application-level parallel I/O library for Earth system models

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Keywords

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