The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami

  • Jonathan P.K. Doye
  • , Hannah Fowler
  • , Domen Prešern
  • , Joakim Bohlin
  • , Lorenzo Rovigatti
  • , Flavio Romano
  • , Petr Šulc
  • , Chak Kui Wong
  • , Ard A. Louis
  • , John S. Schreck
  • , Megan C. Engel
  • , Michael Matthies
  • , Erik Benson
  • , Erik Poppleton
  • , Benedict E.K. Snodin

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

16 Scopus citations

Abstract

This chapter introduces how to run molecular dynamics simulations for DNA origami using the oxDNA coarse-grained model.

Original languageEnglish
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages93-112
Number of pages20
DOIs
StatePublished - 2023

Publication series

NameMethods in Molecular Biology
Volume2639
ISSN (Print)1064-3745
ISSN (Electronic)1940-6029

Keywords

  • Coarse-grained models
  • DNA origami
  • Molecular simulation

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