The Pangeo Ecosystem: Interactive Computing Tools for the Geosciences: Benchmarking on HPC

  • Tina Erica Odaka
  • , Anderson Banihirwe
  • , Guillaume Eynard-Bontemps
  • , Aurelien Ponte
  • , Guillaume Maze
  • , Kevin Paul
  • , Jared Baker
  • , Ryan Abernathey

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    12 Scopus citations

    Abstract

    The Pangeo ecosystem is an interactive computing software stack for HPC and public cloud infrastructures. In this paper, we show benchmarking results of the Pangeo platform on two different HPC systems. Four different geoscience operations were considered in this benchmarking study with varying chunk sizes and chunking schemes. Both strong and weak scaling analyses were performed. Chunk sizes between 64 MB to 512 MB were considered, with the best scalability obtained for 512 MB. Compared to certain manual chunking schemes, the auto chunking scheme scaled well.

    Original languageEnglish
    Title of host publicationTools and Techniques for High Performance Computing - Selected Workshops, HUST, SE-HER and WIHPC, held in Conjunction with SC 2019, Revised Selected Papers
    EditorsGuido Juckeland, Sunita Chandrasekaran
    PublisherSpringer
    Pages190-204
    Number of pages15
    ISBN (Print)9783030447274
    DOIs
    StatePublished - 2020
    Event6th Annual Workshop on HPC User Support Tools, HUST 2019, International Workshop on Software Engineering for HPC-Enabled Research, SE-HER 2019, and 3rd Workshop on Interactive High-Performance Computing, WIHPC 2019, held in conjunction with the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2019 - Denver , United States
    Duration: Nov 17 2019Nov 18 2019

    Publication series

    NameCommunications in Computer and Information Science
    Volume1190 CCIS
    ISSN (Print)1865-0929
    ISSN (Electronic)1865-0937

    Conference

    Conference6th Annual Workshop on HPC User Support Tools, HUST 2019, International Workshop on Software Engineering for HPC-Enabled Research, SE-HER 2019, and 3rd Workshop on Interactive High-Performance Computing, WIHPC 2019, held in conjunction with the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2019
    Country/TerritoryUnited States
    CityDenver
    Period11/17/1911/18/19

    Keywords

    • Benchmarking
    • Cloud
    • Dask
    • HPC
    • Interactive computing
    • Pangeo
    • Xarray

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