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The Pangeo Ecosystem: Interactive Computing Tools for the Geosciences: Benchmarking on HPC

  • Tina Erica Odaka
  • , Anderson Banihirwe
  • , Guillaume Eynard-Bontemps
  • , Aurelien Ponte
  • , Guillaume Maze
  • , Kevin Paul
  • , Jared Baker
  • , Ryan Abernathey
  • IUEM
  • National Center for Atmospheric Research
  • Centre national d'études spatiales
  • Columbia University

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

15 Scopus citations

Abstract

The Pangeo ecosystem is an interactive computing software stack for HPC and public cloud infrastructures. In this paper, we show benchmarking results of the Pangeo platform on two different HPC systems. Four different geoscience operations were considered in this benchmarking study with varying chunk sizes and chunking schemes. Both strong and weak scaling analyses were performed. Chunk sizes between 64 MB to 512 MB were considered, with the best scalability obtained for 512 MB. Compared to certain manual chunking schemes, the auto chunking scheme scaled well.

Original languageEnglish
Title of host publicationTools and Techniques for High Performance Computing - Selected Workshops, HUST, SE-HER and WIHPC, held in Conjunction with SC 2019, Revised Selected Papers
EditorsGuido Juckeland, Sunita Chandrasekaran
PublisherSpringer Science and Business Media Deutschland GmbH
Pages190-204
Number of pages15
ISBN (Print)9783030447274
DOIs
StatePublished - Mar 26 2020
Externally publishedYes
Event6th Annual Workshop on HPC User Support Tools, HUST 2019, International Workshop on Software Engineering for HPC-Enabled Research, SE-HER 2019, and 3rd Workshop on Interactive High-Performance Computing, WIHPC 2019, held in conjunction with the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2019 - Denver , United States
Duration: Nov 17 2019Nov 18 2019

Publication series

NameCommunications in Computer and Information Science
Volume1190 CCIS
ISSN (Print)1865-0929
ISSN (Electronic)1865-0937

Conference

Conference6th Annual Workshop on HPC User Support Tools, HUST 2019, International Workshop on Software Engineering for HPC-Enabled Research, SE-HER 2019, and 3rd Workshop on Interactive High-Performance Computing, WIHPC 2019, held in conjunction with the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2019
Country/TerritoryUnited States
CityDenver
Period11/17/1911/18/19

Keywords

  • Benchmarking
  • Cloud
  • Dask
  • HPC
  • Interactive computing
  • Pangeo
  • Xarray

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